rs73602832 chr19:35693963 C>T
- Sequence
gagccagggcccctctgcctcact[C/T]cagggctttgtgttcttcctactg
- ASB in cell types
- THP-1 (acute monocytic leukemia) neural cell epidermal keratinocytes GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.91 | 0.97 | 1.01 | n/a | n/a | |||
| CTCF_HUMAN | 0.86 | 0.70 | 1.20 | n/a | No Hit | |||
| STAG1_HUMAN | 0.16 | 0.31 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood