rs73672521 chr8:30744100 C>T
- Sequence
ccacgttattgaccctctcccagc[C/T]ggcccgcggcaagaagagttccac
- ASB in cell types
- adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- HCFC1_HUMAN GABPA_HUMAN ANDR_HUMAN TFAP4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 2.02 | 0.33 | 2.25 | n/a | n/a | |||
| GABPA_HUMAN | 0.56 | 1.78 | 1.30 | n/a | No Hit | |||
| ANDR_HUMAN | 3.18 | -0.53 | 2.00 | n/a | No Hit | |||
| TFAP4_HUMAN | -1.95 | 2.39 | 1.00 | 4.81 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Uterus