rs736756 chr1:51878742 A>C
- Sequence
gaacaggcctgaacccctccccca[A/C]cccagtctccctctcgccgacttc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) renal cortex Th1-cells
- ASB for transcription factors
- CREB1_HUMAN SP2_HUMAN TBX21_HUMAN ZN341_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 2.17 | 0.21 | 1.35 | n/a | No Hit | |||
| SP2_HUMAN | 1.32 | -4.69 | 2.00 | 2.83 | Discordant | |||
| TBX21_HUMAN | 2.44 | -2.03 | 1.00 | n/a | No Hit | |||
| ZN341_HUMAN | 0.94 | -1.26 | 2.00 | 0.54 | Weak Discordant | |||
| ATF1_HUMAN | 2.29 | -2.12 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 13
Motif analysis
Genetic associations
GRASP birth weight, hdl cholesterol change with statins, ldl cholesterol, nicotine dependence (smoking), cigarettes per day, parkinsons disease, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood