rs73693343 chr7:34928272 G>A
- Sequence
actgttaagaaatccaagttctgg[G/A]gccccaccataggccaactgaaac
- ASB in cell types
- GM18526 (B – cells Lymphoblastoid Cell Lines) KMS-11 (Plasma cell myeloma) GM17942 (lymphoblastoid cell) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.23 | -0.36 | 1.18 | n/a | No Hit | |||
| STAG1_HUMAN | 2.46 | -2.18 | 1.00 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood