rs73721669 chr7:135662359 C>G
- Sequence
cgcgcgctcgctgccccgccggtt[C/G]aggcggtgaggccaacgcgctccg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma) GM01310 ( Transformed lymphovlasoid cell line ) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN GABPA_HUMAN TBP_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.33 | 0.44 | 1.48 | n/a | No Hit | |||
| ANDR_HUMAN | 2.78 | -0.44 | 1.60 | n/a | No Hit | |||
| GABPA_HUMAN | 1.68 | -0.28 | 1.60 | n/a | No Hit | |||
| TBP_HUMAN | 1.24 | 2.00 | 1.00 | n/a | No Hit | |||
| AHR_HUMAN | -1.56 | 2.22 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid