rs7374177 chr3:46427689 A>G
- Sequence
atacaaagaattttacgctctgcc[A/G]ccacggctggagagcccttaggac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi) HUES64 (embryonic stem cells) GM10847 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.79 | 0.10 | 1.31 | n/a | No Hit | |||
| RAD21_HUMAN | 1.41 | -0.26 | 1.25 | n/a | n/a | |||
| STAG1_HUMAN | 1.65 | -0.57 | 1.20 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood