rs7378858 chr5:10111715 G>A
- Sequence
gactctaatgcctatgaaacgata[G/A]ttttccagctccagcatgccctct
- ASB in cell types
- adrenal gland GSC23 (Glioblastoma) IMR-5 (Neuroblastoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.66 | 2.30 | 2.32 | n/a | No Hit | |||
| RAD21_HUMAN | 0.48 | 2.00 | 1.80 | n/a | n/a |
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