rs7394365 chr10:90087477 A>G
- Sequence
cacactgtggagccttgcccacaa[A/G]aagcacatatcaatccaccacatg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 2588 (Lymphoblastoid Cell Lines) GM10847 (female B-cells Lymphoblastoid Cell Lines) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN IKZF1_HUMAN NFAC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.99 | 0.22 | 1.49 | n/a | No Hit | |||
| STAG1_HUMAN | 1.80 | -2.14 | 1.75 | n/a | n/a | |||
| IKZF1_HUMAN | 2.07 | -2.32 | 1.25 | n/a | n/a | |||
| NFAC3_HUMAN | 3.37 | -3.04 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.51 | n/a | 2.00 | n/a | n/a |
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Motif analysis
