rs7395289 chr11:45293967 C>T
- Sequence
cctcctgggttcaagcaaacctcc[C/T]gccttagcctcccaagtaactggg
- ASB in cell types
- neural cell PANC1 (pancreatic ductal adenocarcinoma) GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.09 | 0.32 | 1.19 | n/a | No Hit | |||
| SMC3_HUMAN | 3.34 | -3.13 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.89 | -1.56 | 1.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg