rs7398443 chr12:51218302 G>T
- Sequence
tgccgcggaggtggtttcatttcg[G/T]aaggtgccagagtaggagctggag
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM01310 ( Transformed lymphovlasoid cell line ) esophagus squamous epithelium
- ASB for transcription factors
- SPT5H_HUMAN AHR_HUMAN ILF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | n/a | 2.04 | 2.00 | n/a | n/a | |||
| AHR_HUMAN | 1.90 | -2.06 | 1.00 | n/a | No Hit | |||
| ILF3_HUMAN | -0.88 | 1.87 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood