rs7404095 chr16:23853269 T>C
- Sequence
cttgacagaagggagtttatttct[T/C]actcatgtcactaaccagtgcagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) macrophages
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells lymphoblastoid cell line) | 0.27 | 0.98 | 1.14 | |||
| macrophages | -4.72 | 1.87 | 2.50 |
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Motif analysis
No data available
Genetic associations
EMBL-EBI chronic inflammatory diseases (ankylosing spondylitis, crohns disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy), inflammatory bowel disease, ulcerative colitis
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Muscularis, Nerve_Tibial, Thyroid, Whole_Blood