rs7404387 chr16:88763732 T>C
- Sequence
gccgcatggaccacaatgattaca[T/C]tgattagcatggaagggccgatgt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) MCF7 WS8 cells breast tumor
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN HDAC2_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.75 | 1.71 | 2.62 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.17 | 1.46 | 2.01 | -0.61 | Weak Discordant | |||
| HDAC2_HUMAN | 0.20 | 2.83 | 2.25 | n/a | n/a | |||
| GATA3_HUMAN | -4.33 | 1.14 | 2.25 | n/a | No Hit | |||
| ERR1_HUMAN | -3.92 | 2.41 | 2.00 | n/a | No Hit |
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Motif analysis
