rs740530 chr7:7182563 C>T

Sequence
gcgccaggagacttcgggtggcgg[C/T]tgcgccataggcgggccacggcct
ASB in cell types
HepG2 (hepatoblastoma) K562 (myelogenous leukemia) CD14+ monocytes 22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN SMAD4_HUMAN STAT1_HUMAN CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.41 -3.77 4.3·10-31.00 2.00 n/a No Hit
SMAD4_HUMAN -2.11 2.50 1.005.7·10-3 1.00 -4.10 Discordant
STAT1_HUMAN 2.38 0.26 9.1·10-31.00 1.50 n/a No Hit
CREB1_HUMAN -0.28 1.15 1.000.01 1.53 n/a No Hit
STAG1_HUMAN 0.94 -0.17 0.041.00 1.00 n/a n/a
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Motif analysis

SMAD4_HUMAN Discordant
SMAD4_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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