rs740532 chr7:7182351 G>A
- Sequence
ggatcagaaatgcggagagtagca[G/A]acacaagccgcaagggggatacaa
- ASB in cell types
- K562 (myelogenous leukemia) glioblastoma cells HepG2 (hepatoblastoma) GSC23 (Glioblastoma)
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN KMT2A_HUMAN PRD10_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.44 | 1.24 | 1.51 | n/a | No Hit | |||
| JUN_HUMAN | 0.93 | -0.10 | 2.00 | n/a | No Hit | |||
| KMT2A_HUMAN | 2.20 | -1.88 | 1.00 | n/a | No Hit | |||
| PRD10_HUMAN | -0.59 | 1.56 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood