rs7406016 chr17:81727812 C>T
- Sequence
ggttttgctcctgggtttgttgac[C/T]cttgggtgtctgctcttttttttt
- ASB in cell types
- LNCaP (prostate carcinoma) ZR-75-1 (invasive ductal carcinoma) HepG2 (hepatoblastoma) ER+ breast tumor
- ASB for transcription factors
- FOXA1_HUMAN RXRA_HUMAN BRD4_HUMAN TBX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.14 | 2.28 | 1.79 | 1.91 | Weak Concordant | |||
| RXRA_HUMAN | 2.62 | -4.53 | 1.50 | -3.80 | Concordant | |||
| BRD4_HUMAN | 1.72 | -0.36 | 1.00 | n/a | n/a | |||
| TBX3_HUMAN | -5.64 | 3.30 | 2.00 | n/a | No Hit |
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Motif analysis
