rs7406439 chr17:82297982 G>A

Sequence
cagcgaggctggggaggaggagga[G/A]gcgctggaacaggaacggccggcc
ASB in cell types
monocytes from periferal blood K562 (myelogenous leukemia) FaDu(Hypopharyngeal squamous cell carcinoma) CD14+ monocytes
ASB for transcription factors
ZN398_HUMAN SRBP2_HUMAN PATZ1_HUMAN ILF3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN398_HUMAN n/a 2.48 1.001.5·10-5 2.00 n/a n/a
SRBP2_HUMAN 3.05 0.71 4.4·10-41.00 3.00 n/a No Hit
PATZ1_HUMAN -2.97 2.10 1.001.0·10-3 1.50 -1.40 Weak Discordant
ILF3_HUMAN 2.35 -1.33 0.011.00 2.00 n/a n/a
STAT1_HUMAN 2.40 0.82 0.020.78 1.83 n/a No Hit
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Motif analysis

PATZ1_HUMAN Weak Discordant
PATZ1_HUMAN pic

Genetic associations

GRASP ldl cholesterol,  parkinsons disease,  total cholesterol
GTEx eQTL Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Testis,  Whole_Blood

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