rs7410537 chr22:49923682 G>A
- Sequence
tgcgtcctgtggtttctctgtcac[G/A]ctaatgattttggagccattattt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) gastroesophageal sphincter
- ASB for transcription factors
- ZN687_HUMAN CTCF_HUMAN ZIC2_HUMAN TADBP_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN687_HUMAN | 3.38 | n/a | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 2.52 | n/a | 1.33 | n/a | No Hit | |||
| ZIC2_HUMAN | 1.99 | n/a | 2.00 | n/a | No Hit | |||
| TADBP_HUMAN | 2.46 | -4.37 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood