rs7412249 chr1:16905456 A>G
- Sequence
tggagactctcttaacagtctgtt[A/G]tccctaggaaggataagagcaaga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) HT29 (colon adenocarcinoma) TALL1 (T-Acute Lymphoblastic Leukemia)
- ASB for transcription factors
- BMI1_HUMAN ATF4_HUMAN NCOR1_HUMAN EHMT2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BMI1_HUMAN | 2.26 | n/a | 3.00 | n/a | n/a | |||
| ATF4_HUMAN | 1.50 | n/a | 1.50 | n/a | No Hit | |||
| NCOR1_HUMAN | 1.81 | -0.47 | 2.17 | n/a | n/a | |||
| EHMT2_HUMAN | 3.14 | -3.13 | 1.00 | n/a | n/a | |||
| ILF3_HUMAN | 1.15 | n/a | 3.75 | n/a | n/a |
Items per page:
1 – 5 of 9
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood