rs7422209 chr2:68405080 C>G
- Sequence
gaagcagtgtggggtgtggcctca[C/G]ctgggaagcgcaaggggttgggga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN MEF2B_HUMAN IKZF2_HUMAN ZN687_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -3.13 | 3.38 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | n/a | 3.21 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -5.10 | 3.21 | 1.50 | n/a | n/a | |||
| ZN687_HUMAN | n/a | 3.14 | 1.00 | n/a | n/a | |||
| SMCA5_HUMAN | -2.17 | 2.60 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Spleen, Whole_Blood