rs7423358 chr2:227840005 T>C
- Sequence
ccccaccctgctttggcttgccct[T/C]tgtgggctacacccactgtctaac
- ASB in cell types
- hTERT-HME1(Telomerase immortalized cell line)
- ASB for transcription factors
- BRCA2_HUMAN ELF1_HUMAN RARA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRCA2_HUMAN | -0.81 | 1.43 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | -1.49 | 1.49 | 1.00 | n/a | No Hit | |||
| RARA_HUMAN | 2.34 | -1.38 | 2.00 | 0.27 | Weak Discordant |
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Motif analysis
