rs742458 chr16:1342876 T>C

Sequence
gggcctgaggaggggatgtggggc[T/C]gtcccgcctccacccacgacagac
ASB in cell types
HEK293 (embryonic kidney) keratinocytes GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ZN341_HUMAN SNAI2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN341_HUMAN 1.50 n/a 2.5·10-31.00 2.00 -2.52 Concordant
SNAI2_HUMAN 2.37 -1.05 0.011.00 1.50 n/a No Hit
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Motif analysis

ZN341_HUMAN Concordant
ZN341_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  ldl cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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