rs743518 chr22:22167872 C>T
- Sequence
cccaggggacactgtgagtcttct[C/T]agaggtgagaaaagcctgaaataa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- P66B_HUMAN BCL6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P66B_HUMAN | 3.07 | -2.94 | 1.00 | n/a | n/a | |||
| BCL6_HUMAN | -3.52 | 1.89 | 2.00 | 3.88 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, hdl cholesterol, hdl cholesterol change with statins, mitral annular calcium, refractive error, schizophrenia, spine bone mineral density (bmd), triglycerides
GTEx eQTL Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Liver, Lung, Minor_Salivary_Gland, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood