rs7437974 chr4:15005183 C>G

Sequence
tgggaaagagaaactgttagtgac[C/G]gctcgggttcaaaccgagatatcc
ASB in cell types
CD14+ monocytes K562 (myelogenous leukemia)
ASB for transcription factors
STAT1_HUMAN ILF3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 0.12 2.64 1.002.4·10-4 1.67 0.55 Weak Concordant
ILF3_HUMAN 2.63 -4.96 0.041.00 2.00 n/a n/a
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Motif analysis

STAT1_HUMAN Weak Concordant
STAT1_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  homa-ir,  ldl cholesterol,  ldl cholesterol change with statins,  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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