rs7438135 chr4:69095621 G>A
- Sequence
caaataactgtgaggaagtgagtc[G/A]gagaacaagctaacctaatgatta
- ASB in cell types
- LNCaP (prostate carcinoma) LHSAR (prostate epithelial cells) HUVEC-C (HUVEC, umbilical vein endothelial cells) ZR-75-1 (invasive ductal carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN TBP_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.13 | 2.37 | 1.52 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.06 | 1.64 | 2.05 | n/a | No Hit | |||
| TBP_HUMAN | -0.13 | 1.58 | 1.00 | n/a | No Hit | |||
| FOXA2_HUMAN | -2.22 | 2.19 | 1.00 | n/a | No Hit | |||
| TF65_HUMAN | 0.16 | 2.28 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy)
GTEx eQTL Breast_Mammary_Tissue, Colon_Transverse, Heart_Atrial_Appendage, Liver, Lung, Minor_Salivary_Gland, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid