rs7440594 chr4:51842716 C>T

Sequence
ctacttccagcagctggtacgagc[C/T]gcccccaactgcgctgcgctgctc
ASB in cell types
K562 (myelogenous leukemia) breast tumor HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
RBM25_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN 0.30 3.85 0.741.4·10-7 1.50 n/a n/a
ESR1_HUMAN 2.63 -0.45 4.2·10-31.00 2.00 1.54 Weak Discordant
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Motif analysis

ESR1_HUMAN Weak Discordant
ESR1_HUMAN pic

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Prostate,  Spleen,  Testis,  Thyroid

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