rs7449323 chr5:178078840 G>C

Sequence
ctaagggggccaagcaagcggcat[G/C]ggtgagtgagacgggtggagcgta
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia)
ASB for transcription factors
ESR1_HUMAN PAX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN -0.15 1.47 1.004.4·10-5 3.14 n/a No Hit
PAX2_HUMAN n/a 2.38 1.001.5·10-3 3.00 -0.92 Weak Discordant
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Motif analysis

PAX2_HUMAN Weak Discordant
PAX2_HUMAN pic

Genetic associations

GRASP body mass index (bmi)
GTEx eQTL Adipose_Visceral_Omentum,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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