rs7449594 chr6:166360941 A>C
- Sequence
atttcagagtatcctcaggtgttg[A/C]aacaacttgtactttcttgttaag
- ASB in cell types
- K562 (myelogenous leukemia) MSC (mesenchymal stem cells)
- ASB for transcription factors
- CEBPB_HUMAN CEBPG_HUMAN ATF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | -1.49 | 2.61 | 1.00 | 2.95 | Concordant | |||
| CEBPG_HUMAN | -2.06 | 2.22 | 1.25 | 3.87 | Concordant | |||
| ATF4_HUMAN | -1.73 | 2.12 | 1.00 | 3.61 | Concordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), prostate cancer, sporadic creutzfeldt-jakob disease
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood