rs7456553 chr7:1203889 T>C
- Sequence
aaagaagccaaatcacatttaacc[T/C]aaagggggcagcaatttattctct
- ASB in cell types
- K562 (myelogenous leukemia) PANC1 (pancreatic ductal adenocarcinoma) bipolar neuron HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN CEBPB_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.01 | -0.34 | 1.42 | -0.45 | Weak Concordant | |||
| CEBPB_HUMAN | 1.97 | 0.55 | 2.07 | n/a | No Hit | |||
| CEBPA_HUMAN | 1.81 | -3.42 | 1.50 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, cystatin c in serum, free-to-total prostate-specific antigen (%fpsa) with intermediate tpsa levels (ng/ml)