rs7459020 chr7:48088999 G>A
- Sequence
ctgctggttctttacaattgccca[G/A]ctgctctgcagaggcgagaagcaa
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CEBPG_HUMAN CEBPB_HUMAN CEBPA_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPG_HUMAN | n/a | 3.69 | 1.75 | 4.54 | Concordant | |||
| CEBPB_HUMAN | -1.10 | 2.03 | 1.50 | 3.67 | Concordant | |||
| CEBPA_HUMAN | -5.04 | 2.96 | 2.00 | 4.85 | Concordant | |||
| SPI1_HUMAN | -0.13 | 1.22 | 1.50 | n/a | No Hit | |||
| TCF21_HUMAN | 1.70 | n/a | 3.00 | -6.67 | Concordant |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, birth weight, cystatin c in serum
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood