rs7459709 chr8:29647475 T>C
- Sequence
gcactgcagagtgagagacgccta[T/C]cagcagggggcagcattgagaaga
- ASB in cell types
- upper lobe of left lung Peyer's patch spleen HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.42 | 2.31 | 1.69 | 5.25 | Concordant | |||
| STAT1_HUMAN | n/a | 2.73 | 3.00 | n/a | No Hit | |||
| STAG1_HUMAN | -0.44 | 0.86 | 1.45 | n/a | n/a | |||
| RAD21_HUMAN | 2.55 | 1.63 | 1.37 | n/a | n/a |
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Motif analysis
