rs746097 chr11:130827937 G>C
- Sequence
caccaacagtgaccttggtgaggc[G/C]ctgggggtgagtcagatcctcctc
- ASB in cell types
- HCT-116 (colon carcinoma) gastroesophageal sphincter LNCaP (prostate carcinoma) stomach
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.31 | 0.33 | 1.24 | n/a | No Hit | |||
| RAD21_HUMAN | 1.05 | -0.15 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, ldl cholesterol