rs7463090 chr8:63402126 G>C

Sequence
tcatctggggagtatttgactctc[G/C]gcttcccctttcactttatgtcag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN IKZF1_HUMAN NFAC3_HUMAN MTA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN -1.39 2.55 1.007.4·10-6 1.00 n/a n/a
IKZF1_HUMAN -2.24 2.55 1.001.7·10-5 1.50 n/a n/a
NFAC3_HUMAN -2.97 3.33 1.003.9·10-5 1.00 n/a No Hit
MTA2_HUMAN n/a 2.65 1.004.9·10-5 2.00 n/a n/a
SPI1_HUMAN -2.52 1.75 1.001.6·10-4 1.50 2.93 Concordant
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Motif analysis

SPI1_HUMAN Concordant
SPI1_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  fasting insulin,  hdl cholesterol,  homa-b,  homa-ir,  simpson-angus scale,  triglycerides,  triglycerides change with statins

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