rs747680 chr20:62875723 T>C
- Sequence
cagtcatctgacccacatagttcc[T/C]gcgttgcctgatgggcgcagcttc
- ASB in cell types
- HepG2 (hepatoblastoma) RWPE1 (prostate epithelial cells) OVCAR8 (high grade ovarian serous adenocarcinoma) KB (cervical adenocarcinoma)
- ASB for transcription factors
- E2F8_HUMAN HIF1A_HUMAN USF1_HUMAN KLF11_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F8_HUMAN | 2.32 | -1.85 | 1.00 | 5.06 | Discordant | |||
| HIF1A_HUMAN | 2.35 | -2.07 | 1.00 | n/a | No Hit | |||
| USF1_HUMAN | 0.10 | 1.84 | 1.33 | n/a | No Hit | |||
| KLF11_HUMAN | 2.24 | -2.06 | 1.00 | n/a | No Hit | |||
| TBX3_HUMAN | 2.16 | -1.35 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid