rs7488 chr11:6612918 C>T
- Sequence
agtaaactggccatttcaatacta[C/T]gtggtcgttacaatgctagaggta
- ASB in cell types
- 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) WA01 (H1, human embryonic stem cells) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ANDR_HUMAN SPI1_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -1.15 | 2.86 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.10 | 0.19 | 1.19 | n/a | No Hit | |||
| CREB1_HUMAN | 2.02 | -1.79 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood