rs7520844 chr1:24727732 C>G
- Sequence
tgggttggcctcggggacgatgat[C/G]taagacagctggagtgtcttcctg
- ASB in cell types
- K562 (myelogenous leukemia) HCASMC (Human coronary artery smooth muscle cells) MOLM14 (Adult acute myeloid leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TCF21_HUMAN CDK8_HUMAN ATF7_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 0.88 | n/a | 2.50 | 1.48 | Weak Discordant | |||
| CDK8_HUMAN | -1.22 | 1.71 | 1.00 | n/a | n/a | |||
| ATF7_HUMAN | -2.43 | 2.59 | 1.25 | 4.40 | Concordant | |||
| STAT1_HUMAN | 1.69 | -0.43 | 1.67 | n/a | No Hit | |||
| ATF2_HUMAN | -1.85 | 2.06 | 1.00 | 5.42 | Concordant |
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Motif analysis
