rs7524421 chr1:26484121 C>G
- Sequence
tttccctagttcctatttaagatg[C/G]agttgctctggttcacatgcccgt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ZN592_HUMAN CAVN1_HUMAN MEF2D_HUMAN PTTG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN592_HUMAN | n/a | 3.98 | 1.00 | n/a | n/a | |||
| CAVN1_HUMAN | -3.35 | 3.24 | 1.00 | n/a | n/a | |||
| MEF2D_HUMAN | -2.58 | 2.89 | 1.00 | -0.23 | Weak Discordant | |||
| PTTG1_HUMAN | -2.48 | 2.73 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood