rs753513 chr17:3890178 C>T

Sequence
cgagtatctggatggccctggcaa[C/T]gggtgccctccgcagctcccgccc
ASB in cell types
A549 (lung carcinoma) HCT-116 (colon carcinoma)
ASB for transcription factors
JUN_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN 1.61 -0.29 1.7·10-41.00 2.61 n/a No Hit
GCR_HUMAN 1.88 0.43 0.020.91 2.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Nerve_Tibial

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