rs7536078 chr1:44731082 A>G

Sequence
cccaccaacatagggcttcaaaaa[A/G]tttgcttgaaactcaaaacggttt
ASB in cell types
HepG2 (hepatoblastoma) breast tumor BEAS-2B (bronchial epithelium) CD14+ monocytes
ASB for transcription factors
RFOX2_HUMAN TBP_HUMAN BRD4_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFOX2_HUMAN 3.00 -3.25 3.6·10-101.00 1.33 n/a n/a
TBP_HUMAN 2.28 -1.50 3.7·10-51.00 1.33 n/a No Hit
BRD4_HUMAN 1.20 0.28 4.7·10-41.00 1.41 n/a n/a
ESR1_HUMAN 2.44 -5.64 8.7·10-41.00 1.33 n/a No Hit
NDF1_HUMAN 1.24 -0.36 1.9·10-31.00 1.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Whole_Blood

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