rs7538354 chr1:21750145 C>T

Sequence
agtcaaacttctgacaaaggttta[C/T]taggccctctctgatatggccctt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ZEB2_HUMAN HDAC1_HUMAN KDM1A_HUMAN E2F8_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZEB2_HUMAN 1.89 -1.26 2.2·10-41.00 1.00 n/a No Hit
HDAC1_HUMAN 1.52 -1.28 4.7·10-41.00 1.33 n/a n/a
KDM1A_HUMAN 1.23 -0.61 7.1·10-31.00 1.25 n/a n/a
E2F8_HUMAN 2.74 -2.62 8.0·10-31.00 1.00 n/a No Hit
MTA2_HUMAN 1.88 -0.95 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Spleen,  Thyroid,  Whole_Blood

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