rs7540775 chr1:227318816 G>A
- Sequence
ccgggccgcgccgggagctgcggc[G/A]ggactgggcgcaggctgggaactg
- ASB in cell types
- HEK293 (embryonic kidney) breast tumor BEAS-2B (bronchial epithelium) HEK293T (embryonic kidney)
- ASB for transcription factors
- ESR1_HUMAN GCR_HUMAN ZFX_HUMAN ZSC30_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.86 | -0.86 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.00 | 0.75 | 1.00 | n/a | No Hit | |||
| ZFX_HUMAN | 0.03 | 1.23 | 2.10 | n/a | No Hit | |||
| ZSC30_HUMAN | n/a | 3.09 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood