rs754554 chr7:24719199 G>T
- Sequence
cttccagcacctgctggagcacag[G/T]gtttctcagatttattgttctgaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) NALM-6 (adult B acute lymphoblastic leukemia)
- ASB for transcription factors
- IKZF1_HUMAN STAG1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.99 | -0.50 | 1.50 | n/a | n/a | |||
| STAG1_HUMAN | 2.74 | -0.09 | 1.00 | n/a | n/a | |||
| GCR_HUMAN | 2.47 | -4.47 | 1.50 | 3.01 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Ovary, Spleen, Uterus, Vagina