rs7547048 chr1:114511320 T>G
- Sequence
tcccgagggaggcgggaactcggt[T/G]cgcgggcgcggagcggtcccggac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes K562 (myelogenous leukemia)
- ASB for transcription factors
- NRF1_HUMAN STAT1_HUMAN RB_HUMAN ARI1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 0.12 | 1.77 | 1.85 | 5.54 | Concordant | |||
| STAT1_HUMAN | 3.05 | n/a | 2.00 | n/a | No Hit | |||
| RB_HUMAN | 3.71 | -0.71 | 1.00 | n/a | n/a | |||
| ARI1A_HUMAN | -0.90 | 2.10 | 2.00 | n/a | No Hit | |||
| NELFE_HUMAN | -0.30 | 2.00 | 3.58 | n/a | n/a |
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Motif analysis
