rs7551818 chr1:147717210 T>G

Sequence
agacatccgggctagagtgactca[T/G]agagtttagggtgcaggcgcttac
ASB in cell types
HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) ER+ breast tumor
ASB for transcription factors
ANDR_HUMAN NFIL3_HUMAN ETV5_HUMAN NFIA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.40 0.87 5.4·10-31.00 2.20 n/a No Hit
NFIL3_HUMAN 1.93 -3.33 0.021.00 1.50 n/a No Hit
ETV5_HUMAN 2.11 -3.90 0.031.00 1.50 n/a No Hit
NFIA_HUMAN 2.35 -1.83 0.031.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Tibial,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Stomach

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