rs75523 chr6:23566428 C>G
- Sequence
ctgttaggcgcaaaactacgacca[C/G]aacccagtatcctctattccctgc
- ASB in cell types
- VCaP (prostate carcinoma) LNCaP (prostate carcinoma) LNCaP95
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.04 | 1.73 | 2.20 | 4.14 | Concordant | |||
| FOXA1_HUMAN | -0.29 | 1.96 | 2.20 | n/a | No Hit |
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Motif analysis
