ADASTRA v6.1.0
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rs75523
chr6:23566428
C
>
G
Sequence
ctgttaggcgcaaaactacgacca[C/G]aacccagtatcctctattccctgc
ASB in cell types
VCaP (prostate carcinoma)
LNCaP (prostate carcinoma)
LNCaP95
ASB for transcription factors
ANDR_HUMAN
FOXA1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN
0.04
1.73
1.00
1.6·10
-17
2.20
4.14
Concordant
FOXA1_HUMAN
-0.29
1.96
1.00
8.5·10
-6
2.20
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
ANDR_HUMAN
Concordant
Show reverse complement
Show rev. comp.
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Genetic associations
GRASP
homa-b
,
total cholesterol
,
years of education
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)
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