rs756827 chrX:10111156 G>A

Sequence
ggtattcttgtatgtgtgttctgc[G/A]taggagggcctgggagttcctgtt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN TADBP_HUMAN NFAC3_HUMAN SMCA5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN 2.70 n/a 1.7·10-41.00 2.00 n/a n/a
TADBP_HUMAN 3.33 -3.67 6.4·10-41.00 1.00 n/a n/a
NFAC3_HUMAN 2.97 n/a 5.9·10-31.00 1.50 n/a No Hit
SMCA5_HUMAN 2.65 n/a 0.021.00 1.00 n/a n/a
MTA2_HUMAN 2.95 n/a 0.021.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP alzheimers disease,  major depressive disorder (broad definition),  major depressive disorder (broad definition) (females),  maternal transmission distortion,  rheumatoid arthritis
GTEx eQTL Spleen,  Thyroid

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