rs757229 chr19:1102115 G>C
- Sequence
caggcctgagtcgggggcagtggc[G/C]ggggcaggctcatagcacccccca
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) GM19099 (female B-cells Lymphoblastoid Cell Lines) HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.19 | 3.11 | 1.91 | n/a | No Hit | |||
| STAT1_HUMAN | 2.19 | n/a | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.51 | 0.49 | 2.75 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Thyroid, Whole_Blood