rs757720 chr7:101173655 A>G

Sequence
cgggcaccaggccaggcctggggt[A/G]gcacggcacttgggcctcagatta
ASB in cell types
K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium)
ASB for transcription factors
NFIC_HUMAN LMBL2_HUMAN NRF1_HUMAN RING2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFIC_HUMAN 3.58 1.49 5.0·10-70.17 1.17 n/a No Hit
LMBL2_HUMAN 3.14 -3.48 4.2·10-41.00 1.00 n/a n/a
NRF1_HUMAN 2.15 -1.48 2.3·10-31.00 1.00 n/a No Hit
RING2_HUMAN 2.27 -1.97 0.011.00 1.00 n/a n/a
GCR_HUMAN 1.03 1.75 0.880.01 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Muscularis,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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