rs760633 chr6:16128734 C>G
- Sequence
gagtgatccaagatatttgaagaa[C/G]agtggcagcttggaggtgtttaat
- ASB in cell types
- MDA-MB-453 (breast adenocarcinoma) GBM39 (Human brain tumor) GM12878 (female B-cells lymphoblastoid cell line) GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN FOXA1_HUMAN SMC3_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.80 | 0.27 | 1.26 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.66 | n/a | 1.83 | n/a | No Hit | |||
| SMC3_HUMAN | 1.69 | -0.22 | 1.29 | n/a | n/a | |||
| ANDR_HUMAN | 1.39 | 0.06 | 1.61 | -4.41 | Concordant | |||
| JUN_HUMAN | 1.23 | 0.56 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP abnormal involuntary movement scale, ldl cholesterol, tardive dyskinesia, total cholesterol, waist hip ratio