rs76102705 chr2:169694539 A>G
- Sequence
ctgggcttgtgagtggggctgccg[A/G]gagggcaggcgtggggcgaggcca
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes 22RV1 (prostate carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- ZN316_HUMAN STAT1_HUMAN ANDR_HUMAN ILF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN316_HUMAN | -0.94 | 1.83 | 1.00 | 0.08 | Weak Concordant | |||
| STAT1_HUMAN | 2.35 | -1.34 | 2.00 | 1.80 | Weak Discordant | |||
| ANDR_HUMAN | 3.16 | n/a | 2.00 | n/a | No Hit | |||
| ILF3_HUMAN | 1.61 | -1.23 | 1.00 | n/a | n/a | |||
| NRF1_HUMAN | -0.53 | 0.43 | 1.60 | -0.54 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood