rs76107489 chr19:53431824 C>T

Sequence
cgaaaacaggtgctaggagagaag[C/T]tgagaggagcaccggtcacgcccc
ASB in cell types
22RV1 (prostate carcinoma) PC9 (lung adenocarcinoma) MDA-MB-453 (breast adenocarcinoma)
ASB for transcription factors
ZBT8A_HUMAN ANDR_HUMAN SP3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT8A_HUMAN 2.71 n/a 3.6·10-41.00 1.50 n/a n/a
ANDR_HUMAN 2.93 0.76 0.010.96 1.50 n/a No Hit
SP3_HUMAN n/a 1.42 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid

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